gravatar for storm1907

2 hours ago by

Hello,
I am trying to compare genome vcf file with bed file, to get out from genome file only these positions present in bed file

which syntax could be correct: bedtools intersect -a file.vcf -b file1.bed or bedtools intersect -a file1.bed -b file.vcf ?

I am confused, and also second variant seems to be correct, but is not working



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