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2 hours ago by

Trying to get site that have a FILTER value of "PASS" or "."

I know of:

bcftools view -f PASS filename.vcf.gz

and

bcftools view -f . filename.vcf.gz

I tried:

bcftools view -f 'PASS | .' filename.vcf.gz

but no dice.

Is it possible to get what I am looking for or do I have to filter separately then concat?



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