bcftools mpileup giving more wildtypes <*> than expected

1

Hi there,
I am having trouble with interpreting bcftools mpileup vcf output. My file has almost all <*> listed for the alternate field.

enter image description here

I am aligning my paired-end reads to an E.coli reference genome. Anyone have any intuition as to why this is happening?


bcftools


DNA-seq


mpileup

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5 hours ago by


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