Assembly oxford nanopore data

1

Hi,

I have raw data collected from Oxford Nanopore sequencing of a bacterial genome. These data consist of multiple fastq files.
What easy to use tool would you recommend to assemble these raw reads?

Thank you for your help!

Audrey


assembly


oxford


nanopore

• 37 views

Flye is available on Galaxy or on Bioconda if you want a user friendly and simple yet performant tool.

Edit - you can combine the fastq files _before_ assembly with eg the linux cat cmd.


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