Are raw RNA-seq data available for samples of TCGA-LUAD (TCGA data set) ?
We have applied for the Raw data of TCGA from dbGAP, but we can only find BAM files for aligned reads. We are interested in analysis of repeat elements which usually cannot be mapped to the genome uniquely. So we would need the raw RNA-seq data and map the reads by ourselves. Does anyone have experience to download raw RNA-seq data of TCGA samples from GDC?
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