Any standalone tool for INDEL Realignment?
I am thinking of using DeepVariant to call variants, and in their documentation they didn't mentioned anyhting about INDEL Realignment, so I was thinking of using a tool for indel realignment before calling DeepVariant.
So is there any standalone tool just for INDEL Realignment.
Currently I am using HaplotypeCaller, which by default does the Realignment.
• 40 views