Hi
I have annotated a vcd file by online VEP
I am trying were the alternative allele is in the vet output
> head(VEP)
#Uploaded_variation Location Allele Gene Feature
1: . 1:782112-782112 A ENSG00000237491 ENST00000412115.2
2: . 1:782112-782112 A ENSG00000237491 ENST00000429505.6
3: . 1:782112-782112 A ENSG00000237491 ENST00000434264.6
4: . 1:782112-782112 A ENSG00000237491 ENST00000443772.2
5: . 1:782112-782112 A ENSG00000237491 ENST00000457084.1
6: . 1:782112-782112 A ENSG00000228327 ENST00000506640.2
Allele column is for wild or mutant allele ? If wild, where the alternative allele is?
Thanks in advance