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2 hours ago by

Hi

I have annotated a vcd file by online VEP

I am trying were the alternative allele is in the vet output

> head(VEP)
   #Uploaded_variation        Location Allele            Gene           Feature
1:                   . 1:782112-782112      A ENSG00000237491 ENST00000412115.2
2:                   . 1:782112-782112      A ENSG00000237491 ENST00000429505.6
3:                   . 1:782112-782112      A ENSG00000237491 ENST00000434264.6
4:                   . 1:782112-782112      A ENSG00000237491 ENST00000443772.2
5:                   . 1:782112-782112      A ENSG00000237491 ENST00000457084.1
6:                   . 1:782112-782112      A ENSG00000228327 ENST00000506640.2

Allele column is for wild or mutant allele ? If wild, where the alternative allele is?

Thanks in advance

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