• Sars-Cov-2 Genome & ACE 2 Exploration

    Published a small extension of MutaFrame, to:

    - Show conserved regions and SNPs of the Sars-Cov-...

  • Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19

    This is a list of Virus Genome Length and GC Content of Severe acute respiratory syndrome coronav...

  • Multiple DESeq2 comparisons

    I have multiple conditions each with multiple mutants and their own wild types. Each sample has b...

  • Complex DESeq2 Model with different gene dosages

    Hi there,

    I am currently trying to design a statistical model for DESeq2 that encompasses what I...

  • Protocol for genome assembly of Sars-cov-2 sequences

    Do you have a protocol using open source software for assembling SARS-CoV-2 genome sequences afte...

  • How to test gene expression variability - expression differences independent of genotype

    We have a mutant (gene KO) that displays two different phenotypes identified by the presence or a...

  • Sequence Retrieval of SARS-CoV Complete Genomes

    Hi guys, I hope to only retrieve complete virus genomes on SARS-CoV (not SARS-CoV-2) and its stra...

  • how to batch download SARS-CoV-2 sequences data from NCBI?

    Hi, I was trying to download SARS-CoV-2 sequences data from NCBI following this link: www...

  • Identifying appearance or disappearance of cell populations between WT and Mut single cell RNA-Seq data

    Hi everyone,

    I've done single cell RNA-seq data analysis using Seurat. Now if I have 2 samples, ...

  • A resource with diverse databases and tools for SARS-CoV-2 (COVID-19) bioinformatics -- Updates

    Dear bioinformatics and genomics community

    We are in the process of setting up resources helpful...

  • For only a few genes, Cuffdiff report more than one FPKM values per locus. Why?

    I followed similar steps mentioned in the procedure part of [Trapnell et al, 2012][1] for an RNAS...

  • Alternative allele in VEP output

    Hi

    I have annotated a vcd file by online VEP

    I am trying were the alternative allele is in the ...

  • Identifying insertion of transposable element in a large plant genome, any recommendations on my situation?

    I am trying to search for the point of insertion (possibly transposable element) between a wild-t...

  • Alternate wild type and mutant of SNPs in 3D

    iCn3D 2.18.0 is now available on NCBI web servers and from GitHub ( github.com/ncbi/icn3d...

  • The SARS-CoV-2 genome alignment option

    Dear all,
    Nowadays many scientists have to solve some problems related to SARS-CoV-2.
    The viral ...



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