gravatar for Saima

2 hours ago by

United States

I have used the solution posted here in the past for counting the abundance of unique sequences in multiple fasta files. Is there a better tool (memory-efficient and fast) for doing the counting for large queries (>100 million reads)? I don't have a reference genome for my samples, so I am trying to find an alignment-free approach for counting the abundance of such a large number of reads ( length <100 nt). Any suggestions will be much appreciated!


modified 2 hours ago

2 hours ago


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