• Gene Set Enrichment Analysis using Variant Density instead of Expression levels?

    Hi, I have a list of genes, along with their variant densities. I can decide which variants to us...

  • Bioinformatics Research Consultant needed for constructing TFBS and regulatory networks from time series plots

    If you are interested in teaching me any of this but you don't have the time to read everything I...

  • sequencing depth in ScRNASeq

    In 10X single cell RNAseq how can be achieve a good sequencing depth to detect lowly expressed ge...

  • Heatmap for RNA-Seq data

    I'm trying to generate a heatmap for almost 15,000 genes expression data across different samples...

  • Help with creating tumor cell line network

    I'm developing and testing some algorithms that scores drug combinations based on how they disrup...

  • Local installation of UCSC Genome Browser

    Hi.I have some questions for local installation of UCSC genome browser.

    I know that there are 5 ...

  • Tool that can split genes into groups with similar expression pattern overtime and plot them?

    Does anyone know of a tool that can produce similar plots to 'DegPatterns' function of 'DEGreport...

  • how to use matplot when you have replicates?

    Hi,

    How can I use matplot() to draw the expression of genes over different conditions when each ...

  • correlating focal CNV values with RNA-seq expression

    Hello

    I would like to use the masked copy number segment from TCGA found on Xena browser and cor...

  • Linear sequence visualization

    Dear Biostars

    I have a list of genes and their positions on a sequence in the following format:
    ...

  • Building a Network from gene expression data

    I have been going through paper mostly of Gene regulatory network , most of the paper starts wit...

  • Comparing Duplicates in two transcriptome data sets

    Lets say you have three transcriptomes taken from the same plant in three different conditions. Y...

  • how to categorize genes by their expression levels in RNA-seq?

    Hi,

    How can we categorize genes by their expression levels? Is there some criteria on read count...

  • Multispecies comparison of transcriptome expression data correcting using control group

    Dear all,

    I’m currently working on a multispecies comparison of RNAseq transcriptome data and I ...

  • To reverse engineer a Gene regulatory network what type of data can I use instead of microarray gene expression data because microarray data can be noisy.

    For my undergraduate project I've been assigned to construct a gene regulatory network using Rice...

  • gene duplication and differential gene expression analysis

    Hello everyone,

    I have a insect genome with no annotation. So mapped annotated NCBI protein seq...

  • Comparing between gene networks of two species

    Hi,

    I have a gene network of honey bee. Since most of the genes in the network were uncharacteri...



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