rMATS BAM file MemoryError Issue 1 Hi everyone! This is my first time posting here. I have a very large BAM file (4.8GB) which I would like to process using the rMATS program to find splice variants. However, when I pass in the file through rMATS, I am receiving the following error. Some searching online […]
error in R 0 Can you help me why these errors happen? $design groupCin. groupMet. groupNotreat. 1 0 0 1 2 1 0 0 3 0 1 0 attr(,”assign”) [1] 1 1 1 attr(,”contrasts”) attr(,”contrasts”)$group [1] “contr.treatment” > cont.matrix <- makeContrasts(CinVsMet = groupCin. – groupMet. ,levels=design) *Error in eval(ej, envir = levelsenv) : object ‘groupCin.’ […]
How to a determine and output if numbers in matrix are above a certain value? 1 Hello, I am working on a matrix with rows as 3000 individuals and columns as coverage depth of millions of sites Usually I would use R to process this dataset. But it is too big that R cannot take […]
We expect investors to focus on CRISPR Therapeutics AG’s CRSP progress with its lead gene-editing candidate CTX001 and other pipeline candidates when it reports second-quarter 2021 earnings results. The company’s surprise record has been dismal so far as its earnings missed estimates in each of the trailing four quarters, the average negative surprise being 20.05%. […]
error in R 0 Can you help me why these errors happen? $design groupCin. groupMet. groupNotreat. 1 0 0 1 2 1 0 0 3 0 1 0 attr(,”assign”) [1] 1 1 1 attr(,”contrasts”) attr(,”contrasts”)$group [1] “contr.treatment” > cont.matrix <- makeContrasts(CinVsMet = groupCin. – groupMet. ,levels=design) *Error in eval(ej, envir = levelsenv) : object ‘groupCin.’ […]
Investment company B & T Capital Management DBA Alpha Capital Managem (Current Portfolio) buys Schwab US Dividend Equity ETF, Vanguard Real Estate Index Fund ETF, ViacomCBS Inc, CRISPR Therapeutics AG, Lemonade Inc, sells iShares S&P Global Clean Energy Index Fund, The Walt Disney Co, The St. Joe Co, IQVIA Holdings Inc, Bank of America Corp […]
SNP filtering 1 Hello everyone, I am trying to filter .vcf files to contain only single point SNP and remove indel. I have remove indel from the .vcf file by using the following command: grep -v $’t-t’ in.vcf > no_indels.vcf I am able to remove indel from .vcf file. But I also want to remove […]
Dive Brief: Caribou Biosciences, one of the first biotech companies formed to turn CRISPR gene editing technology into medicines for humans, raised just over $300 million in an initial public offering priced Thursday, making the leap to public markets roughly 10 years after its founding. The IPO, which follows four months after Caribou’s venture backers […]
SNP filtering 1 Hello everyone, I am trying to filter .vcf files to contain only single point SNP and remove indel. I have remove indel from the .vcf file by using the following command: grep -v $’t-t’ in.vcf > no_indels.vcf I am able to remove indel from .vcf file. But I also want to remove […]
updating vcf file from rsIDs of dbsnp138 to dbsnp144 1 Hi, I have a vcf file with ID column (column no. 3) has rsIDs of dbSNP138 build (hg19). Now, I want to update the same vcf file with dbSNP144 build with the same genomic coordinates (hg19). How to that that? In my opinion, it is […]
Output from macs subcommand ‘bdgpeakcall’ 0 Hi I have a TF ChIP-seq wig file from NCBI GEO with the following top few lines: track type=wiggle_0 name=”Bed Format” description=”xyz.tagAlign , smoothed, background-subtracted tag density” visibility=dense color=200,100,0 altColor=0,100,200 priority=20 X 5 40 8.01596910471638 X 105 140 9.84274069026994 X 205 240 10.3630144423714 I had to call peaks from […]
We expect investors to focus on CRISPR Therapeutics AG’s (CRSP Quick QuoteCRSP – Free Report) progress with its lead gene-editing candidate CTX001 and other pipeline candidates when it reports second-quarter 2021 earnings results. The company’s surprise record has been dismal so far as its earnings missed estimates in each of the trailing four quarters, the […]
Forum:What are the major advances in Bioinformatics since 2016 2 Hi all, I’ve been out of the field of Bioinformatics/Science since 2016 (decided to persue a career in agriculture; not a smart move), but have recently decided to move back over. What have I missed? I have to get back up to speed quickly to […]
ATHENS – Rabid anti-vaccination protesters who took to the streets of the Greek capital to denounce a program that has worked to slow the spread of COVID-19 were fired on with water cannon and tear gas after clashing with police. They are fearful that the New Democracy government will make shots mandatory because the so-called […]
The latest report on the Global Cell Theraputics Market aims to offer comparative study of the past as well as current industry prospects to determine the estimated market growth rate over the forecast period of 2020 to 2025. Further the document contains granular analysis of the important aspects that face the industry expansion such as […]
gene expression of specifics gene 0 I want to compare the gene expression of Diabetes type 2 for my experiment. I have 3 samples: control, after treatment (drug A), After treatment (drug B). There are about 20 genes relevant to the Genetics of type 2 diabetes. Is there any instruction on how to use a […]
Marc Girardot is a strategy consultant and a member of PANDA. Last month, BizNews published his article on natural immunity vs vaccine-induced immunity – ‘Should people who have recovered from Covid take a vaccine?’ – which has been read over 80,000 times. In this interview, Girardot talks extensively about the fallacies surrounding asymptomatic transmission and […]
I have a big file that is a VCF version 4.2 BGZF-compressed variant calling data (checked with htsfile). The problem is that the file looks really weird, it has only random numbers. This big file isn’t compressed by me and I don’t know who has done it so don’t exactly know how its made. If […]
Tobago Stephon Nicholas 21 Hrs Ago Dr Ian Sammy, head, Accident and Emergency Department, Scarborough General Hospital receives his covid19 vaccine from Beryl Samuel-Gray, District Health Visitor, earlier this year. – DIVISION OF HEALTH Chief Secretary Ancil Dennis is disappointed with the number of Tobago healthcare workers presenting themselves for covid19 vaccines. At the post […]
CRISPR Therapeutics AG (CRSP) saw an uptrend of 3.47% in the recent trading with $128.45 being its most recent. The current price level -41.67% lower than the highest price of $220.20 marked by the stock while trading over the past 52-weeks, whereas it is 67.45% higher than the lowest price of $76.71 the company dropped […]
